PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_13676g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 515aa    MW: 55542 Da    PI: 7.5523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_13676g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.2e-09339387355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  MA_13676g0010 339 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 387
                    58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.02E-11334391No hitNo description
SuperFamilySSF474594.84E-17334405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485336386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16337404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-6339387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10342392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MGDQEKSAFV NFHTAGFGSS SAMMNPVITE SSSKATALQN AKCSLPNPSY FSWDSSMAMQ  60
SKGAMGSSSL MNNACEPKNN GSHDIVIGRS VGSSCSLPLR SSVAWNAPKG GILATQNISQ  120
LSSDNGFAER AARLSCFGVG GGPLNLSEPA SAPFHRSVID NSAMSRIPRP NMSELTKVSD  180
TSLSKEEVCA AETGVRKAGR LSRSSTPGLG TSGNESDDAE VSTAHEESSS SDQITSEAAP  240
NAFNGRKRKQ MQKDKAKDFA SLQAEKDTQS TESDGLKGMK YKVVEGVKEK DDVKYKVEQN  300
ASAKTGEGSP KQGKDNIQNS EQPKEDYIHV RARRGQATNS HSLAERVRRE KISERMKFLQ  360
DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLAAV NPRMDFNIEG ILAKDMLQSP  420
TMVFASDTST SYPQLHQPQQ GLVQVGTEGH GIVNQTEALR RTINAQIACI DGYGDVNAQL  480
SHVWDNELQS VVQMGFVQNN HTPLTSQGNS DKLKT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1131510.0BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LLM21e-146B8LLM2_PICSI; Putative uncharacterized protein
STRINGVIT_05s0029g00390.t012e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.38e-70bHLH family protein